THE +3953 (C->T) POLYMORPHISM OF INTERLEUKIN-1β
GENE IN MYOCARDIAL INFARCTION IN TATARS AND
RUSSIANS FROM BASHKORTOSTAN Tulyakova G1,*, Nasibullin T1, Zakirova A2, Khusnutdinova E1, Mustafina O1 *Corresponding Author: Dr. Gulnara Tulyakova, Institute of Biochemistry and Genetics, Ufa Research Center, Russian Academy of Sciences, October Avenue 69, 450054 Ufa, Bashkortostan, Russia; Tel.: +7-3472-361176; Fax: +7-3472-356100; E-mail: gulnarat@mail.ru page: 65
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MATERIALS AND METHODS
We studied DNA samples from 306 male patients with MI (191 Russians aged 45.5 ± 0.5 years, and 115 Tatars aged 45.03 ± 0.6), attending the Republic Cardiac Center and Republic Clinical Hospital in Ufa. The MI was diagnosed on the basis of clinical, enzymatic, electrocardiographic and echocardiographic criteria. All of the following criteria were necessary to confirm this diagnosis: typical chest pain for longer than 30 minutes, an increase in creatine kinase of more than twice the baseline level, characteristic electrocardiographic changes with Q-wave and zone of hypokinesiasia or akinesia. The control group consisted of 245 unrelated healthy male blood donors (116 Russians aged 38.6 ± 0.8, and 129 Tatars aged 39.7 ± 0.7).
Genomic DNA was extracted from whole venous blood by phenol-chloroform extraction [10]. Genotyping was performed by polymerase chain reaction (PCR). The primers 5'-GTT GTC ATC AGA CTT TGA CC-3' and 5'-TTC AGT TCA TAT GGA CCA GA-3' were used to amplify a DNA fragment of 249 bp containing the polymorphic TaqI site [11]. The PCR procedure consisted of three cycles of denaturation at 97°C for 90 seconds, 55°C for 90 seconds and 74°C for 60 seconds, 32 cycles of denaturation at 97°C for 30 seconds, annealing at 55°C for 30 seconds, extension at 74°C for 30 seconds, and a final extension at 72°C for 10 min. [11]. This polymorphism is characterized by a T→C transition. The allele containing C at position +3953 and digested by TaqI restrictase is designated as allele E1. Another allele that was not digested by TaqI (T at position +3953), was named allele E2. The PCR products were analyzed after electrophoresis on a polyacrylamide gel stained with ethidium bromide. The E1 allele gave fragments of 135 and 114 bp, and the E2 allele gave a 249 bp fragment.
Genotype frequencies were checked for deviation from the Hardy-Weinberg equilibrium by the λ2 test, using the Rows x Columns program [12]. The confidence interval (CI) of genotype frequencies were obtained on the basis of Fisher’s distribution. Pair-wise comparison of genotypes and alleles was done with Fisher’s two-side exact test [13]. The strength of association between the alleles and genotypes was estimated by the odds ratio (OR) [14]. Differences were considered significant at a value of p<0.05.
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